Computational protocols

Computing at the NKI Xtal network

• Hardware inventory
• Software services
• How to setup your account.

Backups of /images

• List of tape numbers and content

Connecting to Lab computers from your Xtal Mac or PC

• Lab computers that are networked
• Connect your Mac
• Connect your PC

Information management

PiMS

PiMS is the Protein Information Management System. You can find it at http://xtal.nki.nl:8000/pims/. To get an account go to http://xtal.nki.nl:8000/user/. More information, release schedules and help can be found at http://www.pims-lims.org/.

Administrators:

• Judith
• Mark
• Alex

For technical problems email Diederick. Be sure to paste the full error message in your mail and describe what you were doing as completely as possible.

Crystal Farm

You can find the picture of your xtallization drops at [rockimager.rhcp.nki.nl]

Crystallographic computing information

Structure-based alignments tools

• Mustang
• Indonesia
• Strap
• Posa

Modelling tools

Protein docking

• Rosetta
• ClusPro

Ab initio folding

• Rosetta

Presentation and Pymol

Making big movies with scenes